22q11.2-distal,type-I,D-E,D-F Copy Number Variation - CNVPathwayAtlas

22q11.2-distal,type-I,D-E,D-F Copy Number Variation

Description

22q11.2 distal copy number variations (CNVs) are rare deletions or duplications located distal (telomeric) to the classic DiGeorge syndrome region, specifically between low copy repeats (LCR) D-E or D-F. They cause a distinct, highly variable syndrome with symptoms including developmental delay, speech difficulties, hypotonia, and mild dysmorphic features.

Genomic location

Assembly:

Coordinates:

Disorder Information from Orphanet

ORPHA:261330 Microdeletion syndrome
OMIM: 611867
Prevalence: Unknown
Definition:

A rare chromosomal anomaly syndrome, resulting from the partial deletion of the long arm of chromosome 22, outside the DiGeorge critical region. The phenotype is characterized by prematurity, pre- and post-natal growth retardation, developmental delay (particularly speech), mild intellectual disability, variable cardiac defects, and minor skeletal anomalies (such as clinodactyly). Dysmorphic features present in half of the individuals include microcephaly, arched eyebrows, deep set eyes, narrow upslanting palpebral fissures, ear abnormalities (low-set ears, tags and pits), hypoplastic alae nasi, smooth philtrum, down-turned mouth, thin upper lip, retro/micrognatia and pointed chin. For certain very distal deletions including the SMARCB1 gene, there is a risk of developing malignant rhabdoid tumours. Most deletions are de novo .

Phenotypic features:
Obligate
(100%)
Very frequent
(99–80%)
Frequent
(79–30%)
Occasional
(29–5%)
Very rare
(<4-1%)
Excluded
(0%)
- - -
ORPHA:261337 Microduplication syndrome
OMIM:
Prevalence: Unknown
Definition:

A rare chromosomal anomaly syndrome, resulting from the partial duplication of the long arm of chromosome 22, with a highly variable phenotype principally characterized by developmental delay, intellectual disability, behavioral anomalies, and non-specific craniofacial dysmorphism. Congenital heart malformations, visual and hearing impairment, urogenital abnormalities, and seizures have also been reported. Penetrance is incomplete. In 70% of cases, the duplication is inherited from as asymptomatic parent.

Phenotypic features:
Obligate
(100%)
Very frequent
(99–80%)
Frequent
(79–30%)
Occasional
(29–5%)
Very rare
(<4-1%)
Excluded
(0%)
- - - - -

Molecular pathway

Gene Information

HGNC Gene Name NCBI Ensembl UniProt
UBE2L3 ubiquitin conjugating enzyme E2 L3 7332 ENSG00000185651 P68036
YDJC YdjC chitooligosaccharide deacetylase homolog 150223 ENSG00000161179 A8MPS7
CCDC116 coiled-coil domain containing 116 164592 ENSG00000161180 Q8IYX3
SDF2L1 stromal cell derived factor 2 like 1 23753 ENSG00000128228 Q9HCN8
PPIL2 peptidylprolyl isomerase like 2 23759 ENSG00000100023 Q13356
YPEL1 yippee like 1 29799 ENSG00000100027 O60688
MAPK1 mitogen-activated protein kinase 1 5594 ENSG00000100030 P28482
PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F 9647 ENSG00000100034 P49593
TOP3B DNA topoisomerase III beta 8940 ENSG00000100038 O95985
VPREB1 V-set pre-B cell surrogate light chain 1 7441 ENSG00000169575 P12018
ZNF280B zinc finger protein 280B 140883 ENSG00000275004 Q86YH2
ZNF280A zinc finger protein 280A 129025 ENSG00000169548 P59817
PRAME PRAME nuclear receptor transcriptional regulator 23532 ENSG00000185686 P78395
GGTLC2 gamma-glutamyltransferase light chain 2 91227 ENSG00000100121 Q14390
IGLL5 immunoglobulin lambda like polypeptide 5 100423062 ENSG00000254709 B9A064
RSPH14 radial spoke head 14 homolog 27156 ENSG00000100218 Q9UHP6
GNAZ G protein subunit alpha z 2781 ENSG00000128266 P19086
RAB36 RAB36, member RAS oncogene family 9609 ENSG00000100228 O95755
BCR BCR activator of RhoGEF and GTPase 613 ENSG00000186716 P11274

Evidence