17q12 Copy Number Variation
Description
This region contains HNF1B (TCF2, MIM#189907) gene with early expressions in the kidney, liver, bile ducts, thymus, genital tract, pancreas, lung, and gut. The deletion in this region causes Renal Cysts and Diabetes (RCAD) syndrome (MIM#137920).
Genomic location
Coordinates:
Disorder Information from Orphanet
17q12 microdeletion syndrome is a rare chromosomal anomaly syndrome resulting from the partial deletion of the long arm of chromosome 17 characterized by renal cystic disease, maturity onset diabetes of the young type 5, and neurodevelopmental disorders, such as cognitive impairment, developmental delay (particularly of speech), autistic traits and autism spectrum disorder. Müllerian aplasia in females, macrocephaly, mild facial dysmorphism (high forehead, deep set eyes and chubby cheeks) and transient hypercalcaemia have also been reported.
| Obligate (100%) |
Very frequent (99–80%) |
Frequent (79–30%) |
Occasional (29–5%) |
Very rare (<4-1%) |
Excluded (0%) |
|---|---|---|---|---|---|
| - |
|
- | - |
17q12 microduplication syndrome is a rare chromosomal anomaly with variable phenotypic expression and reduced penetrance associated with developmental delay, mild to severe intellectual disability, speech delay, seizures, microcephaly, behavioral abnormalities, autism spectrum disorder, eye or vision defects (such as strabismus, astigmatism, amblyopia, cataract, coloboma, and microphthalmia), non-specific dysmorphic features, hypotonia, cardiac and renal anomalies, schizophrenia.
| Obligate (100%) |
Very frequent (99–80%) |
Frequent (79–30%) |
Occasional (29–5%) |
Very rare (<4-1%) |
Excluded (0%) |
|---|---|---|---|---|---|
| - | - |
|
- | - |
Molecular pathway
Gene Information
| HGNC | Gene Name | NCBI | Ensembl | UniProt |
|---|---|---|---|---|
| ZNHIT3 | zinc finger HIT-type containing 3 | 9326 | ENSG00000273611 | Q15649 |
| MYO19 | myosin XIX | 80179 | ENSG00000278259 | Q96H55 |
| PIGW | phosphatidylinositol glycan anchor biosynthesis class W | 284098 | ENSG00000277161 | Q7Z7B1 |
| GGNBP2 | gametogenetin binding protein 2 | 79893 | ENSG00000278311 | Q9H3C7 |
| DHRS11 | dehydrogenase/reductase 11 | 79154 | ENSG00000278535 | Q6UWP2 |
| MRM1 | mitochondrial rRNA methyltransferase 1 | 79922 | ENSG00000278619 | Q6IN84 |
| LHX1 | LIM homeobox 1 | 3975 | ENSG00000273706 | P48742 |
| AATF | apoptosis antagonizing transcription factor | 26574 | ENSG00000275700 | Q9NY61 |
| ACACA | acetyl-CoA carboxylase alpha | 31 | ENSG00000278540 | Q13085 |
| C17orf78 | chromosome 17 open reading frame 78 | 284099 | ENSG00000278505 | Q8N4C9 |
| TADA2A | transcriptional adaptor 2A | 6871 | ENSG00000276234 | O75478 |
| DUSP14 | dual specificity phosphatase 14 | 11072 | ENSG00000276023 | O95147 |
| SYNRG | synergin gamma | 11276 | ENSG00000275066 | Q9UMZ2 |
| DDX52 | DExD-box helicase 52 | 11056 | ENSG00000278053 | Q9Y2R4 |
| HNF1B | HNF1 homeobox B | 6928 | ENSG00000275410 | P35680 |
Evidence
- Loading citation... [PMID: 27929632]
- Loading citation... [PMID: 27409573]
- Loading citation... [PMID: 41465172]
- Loading citation... [PMID: 26925472]